{"id":96,"date":"2021-07-06T18:58:08","date_gmt":"2021-07-06T18:58:08","guid":{"rendered":"http:\/\/10.250.7.211\/?page_id=96"},"modified":"2025-09-19T06:04:48","modified_gmt":"2025-09-19T06:04:48","slug":"tools","status":"publish","type":"page","link":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/tools\/","title":{"rendered":"Tools"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"96\" class=\"elementor elementor-96\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-79867b46 elementor-section-full_width elementor-section-stretched elementor-section-height-default elementor-section-height-default\" data-id=\"79867b46\" data-element_type=\"section\" data-settings=\"{&quot;background_background&quot;:&quot;classic&quot;,&quot;stretch_section&quot;:&quot;section-stretched&quot;}\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-no\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-5fee4077\" data-id=\"5fee4077\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-73b7edfc elementor-section-boxed elementor-section-height-default elementor-section-height-default elementor-invisible\" data-id=\"73b7edfc\" data-element_type=\"section\" data-settings=\"{&quot;animation&quot;:&quot;fadeInUp&quot;}\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-inner-column elementor-element elementor-element-349df81a\" data-id=\"349df81a\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-2d2151e0 elementor-widget elementor-widget-heading\" data-id=\"2d2151e0\" data-element_type=\"widget\" data-settings=\"{&quot;_animation&quot;:&quot;none&quot;}\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">Our <b>Tools<\/b><\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-6abca65a elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"6abca65a\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-extended\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-378c9a54\" data-id=\"378c9a54\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-40b895d elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"40b895d\" data-element_type=\"widget\" data-settings=\"{&quot;_animation&quot;:&quot;none&quot;}\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/4-1-e1738137435994-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><p>\u00a0<\/p>\n<p>VacSol a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/sourceforge.net\/projects\/vacsol\/\">\n                                <span class=\"infobox-button-text\">Download VacSol<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-1b342570\" data-id=\"1b342570\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-d545264 elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"d545264\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/logos-e1738138187286-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><div class=\"uagb-ifb-image-content\">\u00a0<\/div>\n<p class=\"uagb-ifb-desc\">PanRV is a Linux based software package in JAVA language that uses both pangenome and reverse vaccinology approaches<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/sourceforge.net\/projects\/panrv2\/\">\n                                <span class=\"infobox-button-text\">Download PanRV<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-499baaf9\" data-id=\"499baaf9\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-c08a3df elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"c08a3df\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/3-1-e1738137546389-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><div class=\"uagb-ifb-image-content\">\u00a0<\/div>\n<p class=\"uagb-ifb-desc\">AbAMPdb is the manually-curated database for antimicrobial peptides (AMPs) specifically against\u00a0<em>Acinetobacter baumannii.<\/em>The database offers insights of antimicrobial potentials of these AMPs<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/abampdb.mgbio.tech\/\">\n                                <span class=\"infobox-button-text\">Enter AbAMPdb<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-26e7ba40 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"26e7ba40\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-extended\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-3cddf0e2\" data-id=\"3cddf0e2\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-5f8daf26 elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"5f8daf26\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/2-1-e1738137641490-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><p>\u00a0<\/p><p>B-pan is the updated version of PanRV, a software package for robust pan-genome analysis. B-Pan integrates functional annotations and algorithms for phylogenetic and evolutionary analysis<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/nustedupk0-my.sharepoint.com\/:u:\/g\/personal\/snasir_msib08asab_student_nust_edu_pk\/EarGjnDkxRZAgE5H4dBGTSkB2rjRp2AOJNhsc2QObikDwg?e=NDgEkd\">\n                                <span class=\"infobox-button-text\">Download B-Pan<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-5f22d9dd\" data-id=\"5f22d9dd\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-254d4abe elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"254d4abe\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/1-1-e1738137686968-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><p>\u00a0<\/p><p>B-vac is an updated version of VacSol, a high-throughput computational pipeline for predicting potential therapeutic targets in prokaryotic pathogens using reverse vaccinology approach<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/1drv.ms\/u\/c\/79c060e03e13f069\/Ee4-JUMih2lLu2YoiaY0zAkBOnH2oxoHCO49vVNyWdxRhQ?e=gfOtqa\">\n                                <span class=\"infobox-button-text\">Download B-vac<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-4f627988\" data-id=\"4f627988\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-765160dc elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"765160dc\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/04\/5-1-e1738137587210-1.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><div class=\"uagb-ifb-image-content\">\u00a0<\/div>\n<p class=\"uagb-ifb-desc\">VacSol-ML is a pipeline that uses machine learning algorithms to predict potential vaccine candidates in ESKAPE pathogens<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"http:\/\/vaccinesai.mgbio.tech\/eskapeml_upload\/\">\n                                <span class=\"infobox-button-text\">Enter VacSol-ML<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-63a0a10d elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"63a0a10d\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-extended\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-6c997d25\" data-id=\"6c997d25\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-631e7783 elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"631e7783\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/05\/BPAdb-1-e1746459492221.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><p>Bacterial Protective Antigens Database is an open-source manually curated database, where you can find experimentally validated bacterial protective immunogens published and reported in literature.\u00a0<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"https:\/\/mgbio.tech\/vaccine_db\/\">\n                                <span class=\"infobox-button-text\">Go to BI-database<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-776fefec\" data-id=\"776fefec\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-03d2271 elementor-widget__width-inherit eael-infobox-content-align--center eael-infobox-shape-square eael-infobox-hover-img-shape-square elementor-widget elementor-widget-eael-info-box\" data-id=\"03d2271\" data-element_type=\"widget\" data-widget_type=\"eael-info-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t        <div class=\"eael-infobox\">\n\t            <div class=\"infobox-icon\">\n\n                            <img decoding=\"async\" src=\"https:\/\/mgbio.asab.nust.edu.pk\/wp-content\/uploads\/2025\/05\/1-e1746458328889.png\" alt=\"\">\n            \n            \n            \n        <\/div>\n            <div class=\"infobox-content\">\n        <div><p>Utilizing advanced machine learning algorithms, Bvac-Al streamlines the identification and evaluation of potential vaccine immunogens. Its powerful ensemble model expertly analyzes\u00a0<span class=\"highlight\">protein sequence data<\/span>, providing unparalleled insights for the development of targeted vaccines against a\u00a0<span class=\"highlight\">wider spectrum of resistant bacteria<\/span>.<\/p><\/div>        <div class=\"infobox-button\">\n            <a class=\"eael-infobox-button\" href=\"http:\/\/vaccinesai.mgbio.tech\/bvacai_upload\/\">\n                                <span class=\"infobox-button-text\">Go to Bvac-AI<\/span>\n                            <\/a>\n        <\/div>\n            <\/div>\n            <\/div>\n\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-33 elementor-inner-column elementor-element elementor-element-2e7bfd77\" data-id=\"2e7bfd77\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap\">\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Our Tools \u00a0 VacSol a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"elementor_header_footer","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-96","page","type-page","status-publish","hentry"],"rttpg_featured_image_url":null,"rttpg_author":{"display_name":"Amjad Ali","author_link":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/author\/mgbioinfo\/"},"rttpg_comment":0,"rttpg_category":null,"rttpg_excerpt":"Our Tools \u00a0 VacSol a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive [&hellip;]","_links":{"self":[{"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/pages\/96","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/comments?post=96"}],"version-history":[{"count":280,"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/pages\/96\/revisions"}],"predecessor-version":[{"id":4074,"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/pages\/96\/revisions\/4074"}],"wp:attachment":[{"href":"https:\/\/mgbio.asab.nust.edu.pk\/index.php\/wp-json\/wp\/v2\/media?parent=96"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}